Indeed, organizing atheists has been compared to herding cats, because they tend to think independently and will not conform to authority. But a good first step would be to build up a critical mass of those willing to 'come out,' thereby encouraging others to do so. Even if they can't be herded, cats in sufficient numbers can make a lot of noise and they cannot be ignored.
Richard Dawkins (2008). “The God Delusion”, p.27, Houghton Mifflin Harcourt